PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G092500.1
Common NameB456_006G092500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 402aa    MW: 42748.1 Da    PI: 7.0457
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G092500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000241839223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        +C +C+k+Fs++  L  H+r H
  Gorai.006G092500.1 18 TCFYCNKVFSSHRALGGHLRIH 39
                        6*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.911744IPR007087Zinc finger, C2H2
SuperFamilySSF576678.54E-51843No hitNo description
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MNFLLPRDDS EEHAGTKTCF YCNKVFSSHR ALGGHLRIHQ DGRILRALNY PGGSSSSVNN  60
TGNPPASLPN SQLNSFASFN SLSAITSNSV NNSGNPPASL PNSQPNSSSS FNSPTQFSTS  120
SVNNSGNSPA SLPNNQLNST AFNSLTLLPA AHLACDFSWM IYLNETNQVS RSQFIGGYSG  180
VPLIPVILSP DFSYGYSYGA TYHHNSLASR AFAPVGSNVD FPYVCSSCAA YYHNILASRA  240
FVPVGMIAAM PSAAFALFGS VVARGFLVDS SLFLGSNGVR QFNTNEFQIS QVTLSPSFGN  300
ALPNIQAQNA GPPSAGSANV GRSERRSSGK RSREADRSRN AETSNASRRP RIAPNEHVEP  360
ENCPKKELQL FVDVVVPSSS SEASSSAEEE DLVDMDLSLH L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484790.11e-102PREDICTED: uncharacterized protein LOC105799018
RefseqXP_012484789.11e-102PREDICTED: uncharacterized protein LOC105799018
RefseqXP_012484788.11e-102PREDICTED: uncharacterized protein LOC105799018
TrEMBLA0A0D2SUI40.0A0A0D2SUI4_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2478134
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]